Star Trek Movie Annotations

I thought I'd caught all of the Star Trek references until someone mentioned Scotty had accidentally lost "Admiral Archer's prized beagle" a reference to Enterprise's Captain Archer. It made me wonder what else I missed and it turns out A LOT.
ComicMix compiled what I imagine is a partial list:
http://www.comicmix.com/news/2009/05/12/star-trek-movie-annotations/